7-TFA-ap-7-Deaza-dA

For research use only. Not for therapeutic Use.

  • CAT Number: I044611
  • CAS Number: 178420-75-2
  • Molecular Formula: C16H16F3N5O4
  • Molecular Weight: 399.32
  • Purity: ≥95%
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7-TFA-ap-7-Deaza-dA(Cat No.:I044611)is a synthetic nucleotide analog derived from 7-deaza-2′-deoxyadenosine, in which the purine nitrogen at position 7 is replaced by a carbon, enhancing stability in chemical and enzymatic processes. This analog is modified at the sugar or phosphate backbone with 7-trifluoroacetyl protection (7-TFA) and an ap linker, making it valuable in oligonucleotide synthesis, especially for studying DNA-protein interactions and epigenetic regulation. Its altered electronic structure reduces hydrogen bonding and base pairing ambiguity, improving base discrimination in research involving mutagenesis, nucleic acid therapeutics, and biochemical probe development.


CAS Number 178420-75-2
Synonyms

N-[3-[4-amino-7-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]pyrrolo[2,3-d]pyrimidin-5-yl]prop-2-ynyl]-2,2,2-trifluoroacetamide

Molecular Formula C16H16F3N5O4
Purity ≥95%
IUPAC Name N-[3-[4-amino-7-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]pyrrolo[2,3-d]pyrimidin-5-yl]prop-2-ynyl]-2,2,2-trifluoroacetamide
InChI InChI=1S/C16H16F3N5O4/c17-16(18,19)15(27)21-3-1-2-8-5-24(11-4-9(26)10(6-25)28-11)14-12(8)13(20)22-7-23-14/h5,7,9-11,25-26H,3-4,6H2,(H,21,27)(H2,20,22,23)/t9-,10+,11+/m0/s1
InChIKey SVVZRCQYSUXVDB-HBNTYKKESA-N
SMILES C1[C@@H]([C@H](O[C@H]1N2C=C(C3=C(N=CN=C32)N)C#CCNC(=O)C(F)(F)F)CO)O
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